Web site and design © 2008 by G6G Consulting Group. All Rights Reserved. Most product content has been taken directly from manufacturer's web sites;
other product content is assembled by G6G Consulting Group. G6G welcomes any corrections and/or comments.
Product Feedback
* Required Field
*Your name:
*Email:
*Questions, comments, or feedback:
    JMP Genomics 3.1

    Category  Genomics>Gene Expression Analysis/Profiling/Tools

    Abstract  JMP Genomics is a statistical discovery software solution. It
    can be used to uncover meaningful patterns in high-throughput
    genetics, gene expression microarray and proteomics data. Interactive
    graphics and analysis dialog boxes are provided to help you explore
    data relationships using a comprehensive set of traditional and
    advanced statistical algorithms. JMP Genomics is designed for life
    science students, biologists, chemists and biostatisticians engaged in
    analyzing data. Point-and-click menus let you select from a variety of
    prebuilt SAS analytic processes and choose customized options
    appropriate for your genomic data sets.

    JMP Genomics features include:

    Customized SAS analytics running behind a JMP user interface which -
    1) Requires No previous SAS programming knowledge; 2) Offers 100
    analytic processes (APs) for data import, quality control, preprocessing,
    analysis, annotation and pattern discovery, plus all standard features of
    the JMP software platform.

    Interactive graphics and summary tables that are generated
    automatically during analysis to - 1) Link points in a graph to lines in a
    corresponding table for easy viewing; 2) Allow selection of sets of
    interesting points to subset to new tables; 3) Produce easy-to-
    understand summaries of large data sets.

    JMP Genomics imports a variety of data formats, including - 1)
    Affymetrix and Illumina SNP and standard genotype data; 2) Affymetrix,
    Agilent and Illumina gene expression data; 3) GenePix, QuantArray and
    several other popular image processors; 3) ABI Analyst, single- and
    multiple-text files; 4) Text, Excel and comma-separated formats.

    Mine genetic marker data from families and unrelated individuals to - 1)
    Perform whole-genome SNP analysis; 2) Summarize information about
    phenotypes and genetic markers; 3) Explore associations between
    genetic markers and binary or quantitative traits; 4) Select tagSNPs for
    haplotypes or areas of high linkage disequilibrium 5) Reconstruct
    haplotypes and discover haplotype-trait associations.

    Identify key genes from large microarray data sets to - 1) Assess quality-
    control metrics to identify and remove outlier arrays; 2) Normalize within
    and across arrays to remove effects of experimental biases; 3) Perform
    gene-by-gene modeling to discover statistically significant differences;
    4) Reveal biological insight with pattern discovery and predictive
    modeling tools.

    Find protein biomarkers, using spectral data to - 1) Bin, detrend and
    find peaks in 2-D spectra; 2) Plot 2-D and 3-D spectra for graphical
    browsing; 3) Align 3-D spectra across multiple data sets 4) Analyze
    preprocessed proteomics data with ANOVA and other methods.

    Annotate results using public or proprietary sources of information to -
    1) Merge in annotation files during analysis; 2) Search public
    databases to construct tables of annotation hyperlinks; 3) Upload
    results to Ingenuity Pathways Analysis (see G6G Product Number
    20017) to seek points of interaction between significantly changing
    gene and protein lists; 4) Color KEGG pathways to identify co-regulated
    genes and more.

    Note: For additional info and features for JMP Genomics 3.1 please
    click here.

    System Requirements  

    OS: Windows XP, Windows 2000, Windows NT 4.x with Service Pack 6
    CPU: Pentium 4 or equivalent processor, 1.86+ GHz minimum, faster
    recommended
    RAM: 1 GB minimum, 2+ GB recommended
    Space: 10 GB minimum, 15+ GB recommended
    Browser: Microsoft Internet Explorer 6 or higher

    Manufacturer   Home office; see web site for international locations.

    SAS Worldwide Headquarters
    SAS Institute Inc.
    100 SAS Campus Drive
    Cary, NC 27513-2414  USA
    877-594-6567
    support@jmp.com

    Manufacturer's Web Site  www.jmp.com/software/genomics/

    Price  Contact manufacturer

    G6G Product Number  20007

    G6G Manufacturer Number  102325
The G6G Directory of Omics and Intelligent Software
Search www.G6G-SoftwareDirectory.com