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    ArrayExpress

    Category  Genomics>Gene Expression Databases/Tools

    Abstract  ArrayExpress is an international public repository/system of
    databases and tools for storing and providing access to functional
    genomics data. Functional genomics data consists of gene
    expression, comparative genomic hybridization (CGH) and chromatin-
    immunoprecipitation (ChIP) experiments.

    ArrayExpress consists of two (2) main databases -
    1) ArrayExpress Repository – a database of microarray experiments.
    2) ArrayExpress Data Warehouse – a database of gene expression
    profiles.

    Additionally, ArrayExpress offers three (3) major software tools -
    1) Expression Profiler – an online tool for microarray data analysis.
    2) MIAMExpress – a tool for data submission to the ArrayExpress
    Repository.
    3) Tab2MAGE – a spreadsheet-based tool for submission of large
    experiments.

    The ArrayExpress Repository is an archive of microarray experiments,
    typically related to peer reviewed publications (or generated by publicly
    funded projects). By contrast, the ArrayExpress Data Warehouse is a
    value-added database that can be queried for expression profiles of
    individual genes or groups of genes by their properties, such as
    names or Gene Ontology (GO) terms.

    Expression Profiler enables you to analyze data online, either
    downloaded from ArrayExpress, or from other sources (e.g., your own
    data).

    MIAMExpress is a web-based tool allowing you to submit Minimum
    Information About a Microarray Experiment (MIAME)-compliant data
    from relatively small experiments (typically up to 20 hybridizations) to
    the ArrayExpress Repository whereas Tab2MAGE is optimized for bulk
    submissions. In addition to these three (3) software tools, there are
    many other software components offered and used by ArrayExpress
    internally.

    System Requirements  This tool is web based.


    EMBL - European Bioinformatics Institute (EBI)
    Wellcome Trust Genome Campus
    Hinxton
    Cambridge
    CB10 1SD
    UK
    Tel: +44 (0)1223 494 444
    Fax: +44 (0)1223 494 468
    www.ebi.ac.uk/support/
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