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    SciTegic Pipeline Pilot - Text Analytics Collection

    Category  Cross-Omics>Data/Text Mining Systems/Tools

    Abstract   The Text Analytics Collection is a set of components for
    mining PubMed, US Patent Office, NIH Grants and personal
    documents. The Text Analytics Collection brings together the utility of
    literature search and text mining with the power of process automation
    and data integration in Pipeline Pilot (see Note 1). Product can help
    you achieve your text mining objectives by linking together search and
    characterization steps into automated routines. It also helps you to
    integrate literature mining with your existing scientific protocols, which
    can then be run interactively or automatically every night.

    Product features/capabilities include:

    Search Online Documents - The Text Analytics Collection gives you the
    ability to extract knowledge from important online document resources
    such as PubMed, US Patents, national institutes of health (NIH)
    computer retrieval of information on scientific projects (Crisp) grant
    database, and Google (user extendable to other remote text data
    sources). Search these databases with interactive queries, or mine
    them with large-scale document retrieval and characterization routines.

    Search Local Documents - You can also search and mine your locally
    stored documents. The Text Analytics Collection indexes and searches
    folders that contain portable document format (PDF), Word, hypertext
    markup language (HTML), or text files on your local disk (extendable to
    other file formats). You can also store the results of online searches in
    local repositories for speedy retrieval and post-processing. Local
    databases of documents stay current automatically by monitoring the
    folder contents for the introduction of any new or edited documents.

    Annotate Scientific Results - When reporting the results of pipelined
    data analyses, it is often useful to include additional information about
    the output data points. With the Text Analytics Collection; you can add a
    few steps at the end of any Pipeline Pilot protocol and have each data
    point serve as a query to search a database of literature. For example,
    after clustering a set of genes with the Sequence Analysis Collection
    (an additional product) (see G6G Product Number 20069), you can
    annotate each gene with summary information from its top reference in
    PubMed (and a link to further search results).

    Identify Emerging Trends - The Text Analytics Collection can be used to
    monitor the scientific literature for topics of interest, and it can alert you
    when new concepts are emerging for those topics. The latter is
    achieved by searching for new articles about your topic of interest and
    detecting the concept words they contain. The association of each
    concept with the topic of interest is calculated over time to detect
    emerging new relationships. This can help you to stay on top of a
    broader class of topics, and learn about breakthroughs before they
    become widely known.

    Mine Patent Databases - The Text Analytics Collection provides you
    with the tools necessary to characterize research and intellectual
    property trends in a field of interest. You can search and process the U.
    S. patent databases (extendable to other patent databases) for trends
    reflecting the quantity of patents, application areas, and companies
    engaged, and more. For example, by building a protocol to process
    patents in the field of fuel cells, you can discover how rapidly this
    emerging field is growing. You can also see that applications for
    automobiles have come to dominate the area and that Honda and
    General Motors are leading innovators.

    Note 1: Pipeline Pilot Overview - Pipeline Pilot streamlines the
    integration and analysis of vast quantities of data flooding the research
    informatics world. It makes the most of your information resources
    through industrial-scale data flow control and advanced mining
    capabilities. You can graphically compose data processing networks,
    known as 'protocols', using hundreds of different configurable
    components for operations such as data retrieval, manipulation,
    computational filtering, and display. These protocols are automatically
    captured as you create them and you can publish them for
    project/enterprise use. From a Web interface, your colleagues can
    invoke your protocols and run them using their own data, etc.

    System Requirements  

    - Pipeline Pilot 6.0 or later
    - Pipeline Pilot Reporting collection (for formatted output)
    - Microsoft Windows with Microsoft Office (for document conversion)
    - Internet access (for searching remote databases)

    Manufacturer   Home office; see web site for international locations.

    Accelrys, Inc.
    10188 Telesis Court. Suite 100
    San Diego, CA 92121-4779
    Tel: 1-858-799-5692
    Fax: 1-858- 799 5100
    support-scitegic@accelrys.com
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