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    Geneious Pro

    Category  Cross-Omics>Sequence Analysis/Tools

    Abstract  Geneious Pro is an integrated, cross-platform bioinformatics
    software suite for manipulating, finding, sharing, and exploring
    biological data such as DNA sequences or proteins, phylogenies, 3D
    structure information, publications, etc. It features sequence alignment
    and phylogenetic analysis, contig assembly, primer design and
    restriction analysis, access to National Center for Biotechnology
    Information (NCBI) and Universal Protein Resource (UniProt), Basic
    Local Alignment Search Tool (BLAST), protein structure viewing,
    automated PubMed searching, and more. Product also includes an
    Application Programming Interface (API) for creating your own plugins.

    Geneious Pro -- Sequence Analysis -- features include:

    1) Consensus sequence, translation and complement update as you
    edit.

    2) Several pairwise and multiple sequence alignment options including
    Progressive pairwise and alignment of nucleotide translation.

    3) Phylogenetic tree building with Unweighted Pair Group Method with
    Arithmetic mean (UPGMA), Neighbor Joining (NJ) with bootstrapping
    and consensus trees.

    4) User-friendly plugin to MrBayes (MrBayes is a program for the
    Bayesian estimation of phylogeny) Bayesian analysis.

    5) Print trees for insert into your research, preserving tree-lengths.

    6) Find motifs, open reading frames (ORFs) and more.

    Geneious Pro -- Sequence Visualization -- features include:

    1) Customizable graphical viewer and editor of sequences, alignments
    and annotations.

    2) Interactive phylogenetic tree viewer with fast selection of source
    sequences in alignment.

    3) Graphs updated real-time including sequence logos, chromatogram
    traces and protein properties.

    4) 3D protein structure viewing

    5) Fast, interactive dot plots and more.

    Geneious Pro -- Lab End Sequence Analysis -- features include:

    1) Contig assembly with automated trimming, assembly, and
    chromatogram editing.

    2) Restriction enzyme mapping and digestion.

    3) Design primers with ambiguities and mismatches.

    4) Test individual primers or search a set of primers for the best
    matches and more.

    Geneious Pro -- Organize Sequences and Publications in a Database --
    features include:

    1) Store and organize all of your research material in one place.

    2) Collaborate and share data over the internet or on a secure, central
    server.

    3) Search and sort sequences by similarity, basic and advanced text
    searching of data.

    4) Extensive import and export including Endnote, Nexus, Newick,
    Fasta, Portable Document Format (PDF), Applied Biosystems Inc. (ABI)
    and many more!

    5) Add your own custom notes to sequences, alignments and trees.
    And more.

    Geneious Pro -- Download Protein Sequences and Gene Sequences --
    features include:

    1) Drag and drop sequences from NCBI [including Gene, Genome,
    Nucleotide, Single Nucleotide Polymorphism (SNP), Structure and
    Protein].

    2) Close integration with Protein Families (Pfam) databases.

    3) Keeps your NCBI and European Molecular Biology Laboratory (EMBL)
    downloads up-to-date automatically.

    4) NCBI BLAST sequences with two (2) clicks of the mouse.

    5) A unique method of rapidly filtering public data as it downloads. And
    more.

    Geneious Pro -- PubMed Search -- features include:

    1) Automatically retrieves newly published articles and can sort them
    based on your interests.

    2) Storage of abstracts and bibliographic information.

    3) Quick links to find original articles and citation record online.

    System Requirements  

    Java 1.5 or 1.6
    Windows 2000/XP/Vista or Mac OS X 10.4/10.5 (Leopard) or Unix/Linux

    Manufacturer   Home office; see web site for international locations.

    Biomatters Ltd.
    Level 6 FAI Building
    220 Queen St
    Auckland 1001
    New Zealand
    Ph +64 (0)9 379 5064
    Fx +64 (0)9 379 5063
    support@biomatters.com
    sales@biomatters.com
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