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    MolQuest version 2.0.2

    Category  Cross-Omics>Sequence Analysis/Tools

    Abstract  MolQuest is one of the most comprehensive, easy-to-use
    desktop applications for sequence analysis and molecular biology data
    management. MolQuest version 2.0.2 is now released and available for
    download as a trial version. It includes one of the fastest and most
    accurate family of eukaryotic gene finding programs, fgenesh/fgenesh+,
    for a variety of different genomes, as well as pipelines for fully automatic
    annotation of eukaryotic (fgenesh++) and bacterial (fgenesb) genomes,
    that were widely used in scientific publications and are well known for
    their accuracy.

    MolQuest provides a user-friendly interface for primer design, internet
    database searches, gene prediction, promoter identification, regulatory
    elements mapping, patterns discovery protein analysis, multiple
    sequence alignment, phylogenetic reconstruction, and a wide variety of
    other functions, for instance:

    1) Run common bioinformatics tasks, such as Basic Local Alignment
    Search Tool (BLAST) search and gene finding, on batches of
    sequences.

    2) Customize data analysis using sophisticated and configurable
    options.

    3) Annotate and visualize results, facilitating interpretation and
    presentation of data.

    4) Representation of a project as a schematic block for convenient
    creation of pipeline links.

    5) The possibility to process several projects simultaneously.
    MolQuest, with its friendly interface, is particularly suited for education
    and learning bioinformatics, university students, MSc or PhD research
    projects, as well as for integration of bioinformatics into high school and
    college curriculums.

    Note: MolQuest contains more than 130 programs and 7 viewers for
    analysis of biomedical data.

    Products main features/capabilities include:

    1) Gene Finding: Gene models construction; splice sites, protein-
    coding exons.

    2) Bacterial Promoter, Operon and Gene Finding.

    3) Gene finding using similarity with expressed sequence tags (ESTs),
    Protein or other genome sequences.

    4) Gene Finding -- in Viral Genomes.

    5) Sequence Comparison -- Sequences alignment, Alignment with
    genome, Alignment genomes.

    6) Sequence Comparison -- Multiple alignments for protein sequences
    and multiple alignments for nucleotide sequences.

    7) Protein Analysis -- Protein Location and Prosite (a database of
    protein families and domains) Pattern finding.

    8) Protein Analysis -- Protein secondary structure.

    9) Protein Analysis -- Protein/DNA 3D-Visual Works.

    10) Genome Visualization Tools -- Genome Explorer / Infogene
    database (of Known genes of many organisms).

    11) Analysis of gene expression data -- (SelTag) -- SelTag is one of the
    best-of-breed tools for analyzing gene expression data. It allows you to:
    a) Analyze either all or selected groups of genes or tissues; b) Select
    tissue-specific genes on the complex criteria basis; c) Visualize
    expression data; d) Identify genes, which are expressed similarly
    (correlatively) in the given set of tissues; e) Select specific genes, such
    as receptors or secreted proteins, associated with certain disorders.

    12) Search for motifs -- Search for promoters/functional motifs.

    13) Find and Map repeats -- Find and map repeats in small genomes.

    14) Sequences manipulation -- Manipulations with sequences.

    15) Sequences manipulation -- RNA structures.

    16) Clustering ESTs and Synteny -- Clusters of ESTs.

    17) Clustering ESTs and Synteny (The condition of two (2) or more
    genes being located on the same chromosome whether or Not there is
    demonstrable linkage between them.) -- Human Synteny - Mouse
    Synteny - Rat Synteny.

    System Requirements  

    Pentium III-1000 MHz, 512 Mb RAM, 1 GB free space on hard disk.

    Note: Some programs use statistical functions from "R" free software
    environment for statistical computing and graphics and require the R-
    package to be installed on your computer.

    Manufacturer   Home office; see web site for international locations.

    Softberry, Inc.
    116 Radio Circle, Suite 400
    Mount Kisco, NY 10549, USA
    Tel. (914) 242-3592, fax (914) 242-3593
    E-mail for sales and product information:
    softberry@softberry.com

    Manufacturer's Web Site  www.molquest.com/molquest.phtml

    Price   Contact manufacturer

    G6G Product Number  20126

    G6G Manufacturer Number 102410
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