 |
| |
 |
| |
 |
| |
 |
| |
 |
| |
 |
| |
 |
| Web site and design © 2008 by G6G Consulting Group. All Rights Reserved. Most product content has been taken directly from manufacturer's web sites; other product content is assembled by G6G Consulting Group. G6G welcomes any corrections and/or comments. |
Category Cross-Omics>Sequence Analysis/Tools Abstract GenomeQuest is a web-based, sequence information platform for managing and mining sequence data and is accessed through an in-house enterprise installation or secure, hosted application service provider (ASP) service. With GenomeQuest, bioinformaticians, scientists and Intellectual Property (IP) professionals alike can quickly explore biological sequence information while simultaneously investigating the intellectual property landscape.
private databases at once, execute any number of search strategies, and then quickly apply filtering parameters to deliver the answers you need to questions of research validity, freedom-to-operate, patent infringement, business opportunity, and more, all through an easy-to- use web interface. Product features/capabilities include: Sequence Patent Databases -- GenomeQuest houses one of the largest annotated sequence patent databases - GQ-PAT. The database is updated daily and contains 20x more sequence patents than GenBank and more annotations than RefSeq. The GQ-PAT database includes patent sequences from multiple patent databases - global patent offices, publicly available bio-sequence databases and web resources including: United States Patent and Trademark Office (USPTO); European Patent Offices (EPO); patents posted online by World Intellectual Property Organization (WIPO) / Patent Cooperation Treaty (PCT) or with US equivalents. The International Patent Documentation Center (INPADOC) family of information allows the manufacturer to extend its coverage to secondary issuing offices. GQ-PAT data is both automatically filtered and manually curated to detect and eliminate errors originating from source databases to ensure consistency and accuracy. Data from all sources is processed in GenomeQuest’s proprietary automated pipeline into GQ-PAT to make the sequences as well as all annotations searchable and browsable. Biological Sequences -- With GenomeQuest the latest sequence data is all in one place. Information from public nucleotide and protein sequence databases including GenBank, Affymetrix, ENSEMBL, NCBI ProbeDB, Ig Blast, and RefSeq are all accessible. GenomeQuest also offers DrugBank Pro, a drug target database, which combines pharmacological information with sequence, and structure, as well as Investigational New Drug (IND) information. License holders can access GeneSeq data through GenomeQuest, as well. Flexible Sequence Search -- Not all search algorithms are created equal so GenomeQuest gives you four (4) different search algorithms to choose from including Basic Local Alignment Search Tool (BLAST), Percent Identity (GenePAST), Fragment Search, and Motif/Pattern Search. Each strategy includes a set of parameters that can be adjusted for your sequence. GenePAST - Also referred to as Percent Identity, GenePAST search is used to strictly look for percent identity of one sequence against another. This is ideal for short sequence searchers because, unlike BLAST, GenePAST is non-heuristic and allows the user to specify percentage identity on the sequence itself. GenomeQuest also offers Fragment search to find alignments between fragments that are common between query and subject sequences. As well as Pattern Matching, that makes necessary allowances for ambiguity in your query sequence. Pattern Matching works with Prosite (database) patterns, regular expressions and the International Union of Pure and Applied Chemistry (IUPAC) ambiguity codes for nucleotides and amino acids. Keyword Search -- GenomeQuest keyword search enables you to find sequences using a keyword located in the annotation. Search GQ-PAT or choose a protein or nucleotide database directly from the database tree to run the search against. GenomeQuest provides a list of default fields searched within each database during the keyword search. Results can be narrowed down by filtering on default fields as well as exported to a Word or Excel report. View annotation details or the sequence itself, by selecting appropriate tabs. Advanced Results Management -- Once GenomeQuest has run your search, you can easily navigate through a series of tabs, to apply one of many content dependent functions against the results. FilterSmart Technology -- Some searches return hundreds or thousands of results. GenomeQuest’s FilterSmart technology enables flexible and fast analysis of search results. Simultaneously filter on any number of alignment and/or annotation properties through simple pull- down menus, reducing results to highly relevant sequences in minutes. Based on the search strategy chosen, FilterSmart parameters are populated for only those fields available in the results. For instance filters applied to GenePAST results might include sequence identifier, alignment statistics, query length, patent filing date and legal status (granted or application), which enables you to determine and filter on whether a patent is granted. Application Launching -- Further manage results by launching sequence analysis applications e.g. ClustalW, Extensible Markup Language (XML) for BizInt Smart Charts, or others which may or may Not be native to GenomeQuest. With an enterprise installation of GenomeQuest users can add on their own sequence analysis applications. Alerting -- Stay abreast of updates to a chosen search. When you set an alert on a sequence search in GenomeQuest, the exact same search is run [same query, strategy, parameters, and database(s)] every time any one of the databases is updated. Then GenomeQuest automatically notifies you via e-mail if new results are found. Reporting -- Whether producing reports for your customers or sharing results with a colleague, GenomeQuest makes it easy. Instantly run reports using pre-existing templates or create custom reports based on data selections. GenomeQuest reports provide a full audit trail detailing your search filters, parameters, database strategies, etc. Reports can be produced in Excel or Word formats. Exporting -- GenomeQuest enables you to export sequences into a text file for analysis in another application. You can either use filtering or select the sequences by hand. Formats for export include FASTA, GenBank or EMBL. Saving and Sharing Results -- GenomeQuest automatically saves all search results and houses them in My GenomeQuest - a central repository of searches you can organize into project folders and then allow others users to access, for collaboration and information sharing. The Right Fit -- Get the right combination of access, economy, and security to make GenomeQuest fit your usage and business needs with two (2) access choices. GQLive! -- If you’d like to get started searching today, sign up for GQLive! GQLive! a secure, hosted Internet service providing GenomeQuest biological sequence search, content, and analysis. Enterprise Installation -- GenomeQuest offers those looking for internal hosting and data access; onsite installation of GenomeQuest. This includes the GenomeCast Update Service, a through-the-firewall updating service that delivers content to keep your data current. Add functionality with the GQ ContentManager module which enables you to integrate your own proprietary data into GenomeQuest, so you can search your in house data along side the data produced by GenomeQuest.
Contact manufacturer Manufacturer Home office; see web site for international locations.
1700 West Park Drive, Suite 260 Westborough, MA 01581 Phone: 508-616-0100 Fax: 508-616-0110 contact-us@genomequest.com
com/GenomeQuest_biological_sequence_patent_database.html Price Contact manufacturer G6G Product Number 20131 G6G Manufacturer Number 101120 |
| The G6G Directory of Omics and Intelligent Software |
 |
Search www.G6G-SoftwareDirectory.com