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    Illumina BeadStudio Genotyping Module version
    3.2.32

    Category  Genomics>Genetic Data Analysis/Tools

    Abstract  The BeadStudio Genotyping Module provides efficient data
    analysis for Illumina's GoldenGate and Infinium Assays. This module
    allow users to normalize raw data, generate genotype calls, perform
    clustering, analyze data intensity, calculate loss of heterozygosity (LOH),
    and perform copy number variation (CNV) analysis with data generated
    from GoldenGate or Infinium Assays using one simple software
    package.

    The latest release of the BeadStudio Genotyping Module, version
    3.2.32, supports analysis of InfiniumHD 610-Quad and Human 1M-Duo
    BeadChip data. It also allows users to combine and merge data from
    different product versions within the same genotyping project (e.g.,
    HumanHap550 v2.0 and HumanHap550 v3.0 BeadChips) using the
    intersection of the common Single Nucleotide Polymorphisms (SNPs)
    and probe annotation data from both cluster files.

    BeadStudio offers advanced and flexible graphical tools to visualize
    CNV regions along different chromosomes and allows users to study
    chromosomal aberrations and allelic imbalances using features such
    as:

    1) Copy number variation analysis tools.

    2) Copy number analysis workflow with access to multiple CNV
    algorithms.

    3) Customized bookmarks of interesting genomic regions.

    4) Color-coded bookmarks representing different copy number values.

    5) Estimated copy number value and confidence score at each locus.

    6) Auto-detection of chromosomal aberrations and book-marking.

    7) Chromosomal heat map for examining copy number aberrations
    across the entire genome for multiple samples.

    8) Analyze data from two (2) different product versions within the same
    project.

    The BeadStudio Genotyping Module includes full integration with
    Infinium Laboratory Information Management System (LIMS) server (an
    additional product), allowing researchers to directly access data and
    manage projects from within BeadStudio.

    With advanced rule-based filtering, sorting features, and the ability to do
    calculations within the data table, BeadStudio offers a great deal of
    flexibility for data manipulation. BeadStudio is an easy-to-use, leading-
    edge tool designed to power your research using your Illumina System.

    Note: See G6G Product Number 20002 for additional product info from
    this manufacturer.

    System Requirements  

    BeadStudio v3.0 and higher leverages available memory in your
    workstation to optimally analyze your data with improved performance.
    Users can take advantage of 64-bit processors with improved memory
    handling to better and more quickly analyze their data.

    To better process data from highly dense genotyping arrays such as the
    Human1M BeadChip, we recommend a workstation with 4GB+ RAM on
    a 64-bit system. For all genotyping assay data analysis, a minimum of
    4GB RAM on a 32-bit system is required.

    Manufacturer   Home office; see web site for international locations.

    Illumina, Inc.
    9885 Towne Centre Drive
    San Diego, CA 92121-1975
    USA
    tel 1.858.202.4566
    fax 1.858.202.4545
    info@illumina.com

    Manufacturer's Web Site  www.illumina.com/pages.ilmn?ID=169

    Price   Contact manufacturer

    G6G Product Number  20153

    G6G Manufacturer Number 101345
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