Web site and design © 2008 by G6G Consulting Group. All Rights Reserved. Most product content has been taken directly from manufacturer's web sites;
other product content is assembled by G6G Consulting Group. G6G welcomes any corrections and/or comments.
Product Feedback
* Required Field
*Your name:
*Email:
*Questions, comments, or feedback:
    TERANODE Design Suite (TDS) Biological Modeler

    Category  Cross-Omics>Pathway Analysis/Tools

    Abstract  Biological Modeler is a software application for modeling
    biological systems such as metabolic and signaling pathways.
    Biological Modeler has a graphical environment that suits the needs of
    both informatics and scientific users. Biological Modeler has a wide
    range of model and data import, export and annotation capabilities for
    integrative and qualitative modeling.

    Biological Modeler also has strong support for kinetic simulations and
    data analyses based on rigorous biochemical and biophysical theories.
    Biological Modeler enables users to import pathway models from a
    number of sources or create their own using a graphical editor.

    Biological Modeler's key features/capabilities include:

    Graphical Pathway Editor --

    1) Visual Editing - Graphical palette of objects and relationships can be
    used to schematically define a pathway.

    2) Cut-and-Paste - Pathways or portions of pathways are easily copied
    or deleted using familiar graphical cut-and-paste procedures with the
    mouse.

    3) Hierarchical Pathways - Functional and physical hierarchies can be
    definable at any level and can be nested together.

    4) User-defined Properties - Pathway objects and relationships can be
    modified to track data about entities in the pathway. Property types
    include numeric, text, formulas, images, files, and others.

    5) Import and Export - Pathways can be imported from external
    repositories such as Kyoto Encyclopedia of Genes and Genomes
    (KEGG) and can be shared with other applications through the Systems
    Biology Markup Language (SBML).

    6) Broad Pathway Support - Metabolic pathways, signaling pathways,
    biochemical reactions, gene regulation, protein interactions, and more
    can be imported or created.

    Pathway Analytics --

    1) Data Visualization - Data can be mapped and color-coded to
    pathways to visualize expression and concentration levels from
    experiments.

    2) Scientific Plotting - Simulation results and experiment data can be
    plotted and visualized including both discrete and time-series data.

    3) Programming-free Simulation - Kinetic simulations are automatically
    created for pathways. Simulations are performed with state-of-art
    numerical methods for comparison with experiment data.

    4) Scientific Plotting - Simulation results and experiment data can be
    plotted and visualized including both discrete and time-series data.

    5) Parameter Sets - Behavioral analysis can be performed by varying
    parameters of the pathway. Parameter sets provide a means to
    investigate behavior of a pathway (e.g., sensitivity analysis).

    6) Curve-fitting and Optimization - Pathway parameters can be
    automatically estimated to fit simulated results to experiment data.

    7) Customizable Reports - Data and pathway properties reports are
    easily defined and available for searching, sorting, export, or printing.

    Data Integration --

    1) Dynamic Data Set - Biological Modeler is fully integrated with Protocol
    Modeler (an additional module) allowing data from the lab to
    automatically link to analysis.

    2) Import and Export - Data can be imported for analysis from Affymetrix,
    Excel, Microarray Gene Expression Markup Language (MAGE-ML),
    comma-separated values (CSV), and other formats, and can be
    exported in the CSV format.

    Collaboration --

    1) Search - Pathways and the objects in pathways are fully searchable
    by properties and property values.

    2) Annotation - Objects in a pathway can be annotated with file
    attachments, drawings, text notes, web links, and more to provide
    contextual or historical information about analysis and findings.

    3) Check-in/Check-out. Revision control over changes to pathways in a
    multi-user environment is controlled using check-in/check-out of the
    TERANODE Model Server.

    System Requirements  

    To install TERANODE Design Suite, your system must meet the
    following minimum requirements:

    Windows®
    At least an Intel® Pentium® 4 800 MHz processor (2 GHz
    recommended)
    Microsoft® Windows 2000 or Windows XP
    At least 256 MB of random-access memory (RAM) installed (512 MB
    recommended)
    At least 200 MB of free hard disk space

    RedHat Linux
    At least an Intel® Pentium® 4 800 MHz processor (2 GHz
    recommended)
    At least 256 MB of random-access memory (RAM) installed (512 MB
    recommended)
    At least 200 MB of free hard disk space
    RedHat 8 or later

    Manufacturer   Home office; see web site for international locations.

    Teranode Corporation
    411 1st Avenue S., Suite 700
    Seattle, WA 98104
    Phone: (206) 219-3000
    Fax: (206) 219-3001
    General Info: info@teranode.com

    Manufacturer's Web Site  www.teranode.
    com/products/tds/biological_modeler.php

    Price   Contact manufacturer

    G6G Product Number  20156

    G6G Manufacturer Number 102589
The G6G Directory of Omics and Intelligent Software
Search www.G6G-SoftwareDirectory.com