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Discovery Studio SciTegic Pipeline Pilot - Gene Expression Collection SciTegic Pipeline Pilot - Sequence Analysis Collection SciTegic Pipeline Pilot - Text Analytics Collection Acquired Intelligence, Inc. Acquire Acquire SDK 2.1 Active Motif, Inc. PipeWorks Affymetrix Affymetrix Expression Console Software (v.1.0) Affymetrix GeneChip Sequence Analysis Software (GSEQ) v4.0 Agilent Technologies, Inc. Agilent GeneSpring GT 2.0 Agilent GeneSpring GX Version 9.0.2 Agilent GeneSpring MS AITIA International, Inc. Multi-Agent Simulation Suite (MASS) Alitora Systems, Inc. Memomics Innovation Network Alyuda Research NeuroFusion NeuroIntelligence AndroMeta LLC AndroMeta Applied Bioinformatics Cyrille2 Applied Biosystems, Inc. Applied Biosystems BioAnalyst Software Applied Biosystems SNPbrowser Software v3.5 Applied Maths, Inc. GeneMaths XT Kodon Argonne National Laboratories Repast Simphony Ariadne Genomics, Inc. MedScan Pathway Studio ResNet Databases ASA Corporation ModelMAX Australian National University, Research School of Biology, Genomic Interactions Group, ARC Centre of Excellence for Integrative Legume Research PathExpress Bayer Technology Services GmbH Bayer MoBi Bayer PK-Sim Bayesia SA BayesiaLab 4.4
Informatics Department, Andreas Freier PROTON BiGCaT Bioinformatics PathVisio
PATIKAmad PATIKAweb bioalma AKS2 (alma Knowledge Server) BIOBASE GmbH Cell Illustrator 4.0 Professional Online ExPlain Analysis System BioCarta, Inc. BioCarta Pathways BioDiscovery, Inc. ImaGene 8.0 ImaGene CGH Nexus Copy Number Nexus Expression Bioinformatics Solutions PatternHunter PEAKS ZOOM BioInquire, LLC ProteoIQ Biomatters, Ltd. Geneious Pro Biomax Informatics AG BioLT Literature Mining Tool BioRS Integration and Retrieval System BioXM Knowledge Management Environment HarvESTer™ Analysis System Pedant-Pro Sequence Analysis Suite Biomind LLC Biomind ArrayGenius Biosemantics Group (Erasmus MC University , Leiden University) Biosemantics Group Anni 2.0
Distributed Annotation System (DAS) Biotique Systems, Inc. BLIS (Biotique Local Integration System) XRAY BLIA Solutions BLIASoft Knowledge Discovery 1.1 BlueGnome Ltd BlueFuse for Microarrays Boston University, Bioinformatics Program VisANT British Columbia Cancer Research Centre, Department of Cancer Genetics and Developmental Biology System for Integrative Genomic Microarray Analysis (SIGMA) Broad Institute of MIT and Harvard Argo Genome Browser Connectivity Map (cmap) GenePattern Gene Expression Analysis Module GenePattern Proteomics Module GenePattern SNP Analysis & Data Format Conversion Modules Gene Set Enrichment Analysis (GSEA) Integrative Genomics Viewer Bruker Daltonics BioTools ClinProTools ProteinScape
supported Center operated by the Columbia University Herbert Irving Comprehensive Cancer Center and The Broad Institute of MIT and Harvard geWorkbench California Institute of Technology, WormBase Textpresso Cardiff University Triana Carnegie Institution, Department of Plant Biology, Stanford, California, andThe Medical College of Wisconsin, Milwaukee, Wisconsin PubSearch Case Western Reserve University PathCase
HuGE Navigator Chalmers University of Technology, Department of Physical Resource Theory, Complex Systems Group; Goteborg University and Hampshire College, Cognitive Science breve Charité Universitätsmedizin Berlin, CBB Group, Institute for Medical Genetics GeneWanderer Human Phenotype Ontology Ontologizer 2.0 Charité University Medical School, Department of Neuropaediatrics GeneDistiller Charles River Analytics, Inc. BNet.Builder Children's Hospital Informatics Program at Harvard-MIT, Division of Health Sciences and Technology, and Children's Hospital Boston, Informatics Program Bionet Cincinnati Children's Hospital Medical Center, Divsion of Biomedical Informatics ToppGene Suite CLC bio A/S CLC bio Combined Workbench CLC Genomics Workbench CLC Main Workbench
Sciences, Hemant Ishwaran and Case Western Reserve University, Department of Epidemiology and Biostatistics, J Sunil Rao BAMarray Coensys Inc. AnyLogic Cold Spring Harbor Laboratory, The European Bioinformatics Institute, and The Gene Ontology Consortium Reactome Compendia Bioscience, Inc. Oncomine Concepts Map Oncomine Professional Oncomine Research
Compumine Rule Discovery System
Research Unit on Biomedical Informatics (GRIB), Barcelona Biomedical Research Park (PRBB) ByoDyn Computational Biology Center at Memorial Sloan-Kettering Cancer Center cPath Complutense University, Computer Architecture Department; National Center for Biotechnology, CNB-CSIC, Biocomputing Unit, Madrid, Spain Semantic Features in Text (SENT) Cornell University, Department of Computer Science, Thorsten Joachims; initially developed at University of Dortmund, Informatik, AI-Unit SVMlight Cytoscape Consortium Cytoscape Dana-Farber Cancer Institute, J. Craig Venter Institute and Harvard School of Public Health TM4 Microarray Software Suite DecisionQ Corporation FasterAnalytics DM STAT-1 CONSULTING GenIQ Model Software DNASTAR DNASTAR ArrayStar DNASTAR ArrayStar QSeq module DNASTAR Lasergene 7.2 SeqMan NGen dtSearch Corp. dtSearch 7.4 Duke University, Department of Computer Science Banjo 2.0.1 EMBL - Biocomputing, Bork Group Medusa EMBL - Biocomputing, Bork Group and University of Zurich Institute of Molecular Biology eggNOG EMBL - EBI ArrayExpress BioModels Database Expression Profiler: Next Generation EML Research gGmbH, Scientific Databases and Visualization Group SABIO-RK EML Research, Molecular and Cellular Modeling Group (MCM) and Scientific Databases and Visualization Group (SDBV), and University of Heidelberg, Department for Modeling of Biological Processes SYCAMORE EMBL, Structural and Computational Biology Unit OnTheFly
Iconix Extensible Informatics System (IXIS) Equbits, Inc. Equbits Foresight
the Department of Bioinformatics HeatMapper SNPExpress European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus Whatizit Expert Systems S.p.A. Cogito Intelligence Platform Exsys Exsys CORVID |
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