Agent-Based Modeling/Simulation/Tools

Abstracts by Bio Application > Cross-Omics > Agent-Based Modeling/Simulation/Tools

Each product name listed below links to a product abstract.

AgentCell

ALC (Automated Layer Construction)

AndroMeta

AnyLogic

Bayer MoBi

Bayer PK-Sim

BehaviourComposer 2.0

BioAmbient Machine (BAM)

Bio-PEPA

BIOCHAM

BioDiVinE

BioMet Toolbox

BioNessie

BioNetGen

BioUML

breve

C-ImmSim

CancerSim

Cell Illustrator

ChemCell

CompuCell3D

CycSim

Cyto-Sim

DataRail

Discovery Studio

Dizzy

E-Cell System

Framework for Evaluation of Reaction Networks (FERN)

GenoCAD

gfit

GNU MCSim

GreatSPN

GridCell

In silico Biochemical Reaction Network Analysis (IBRENA)

Infobiotics Workbench (IBW)

Integrated Net Analyzer (INA)

JAva-based Multipurpose Environment for Simulation II (JAMES II)

JigCell

JSim Modeling System

MASON

MathModelica

MCell

Meredys

MesoRD

metaABM

METAMorph (Model for Experimentation and Teaching in Artificial Morphogenesis)

MetaPlab Virtual Laboratory

Möbius

Model-Checking Kit

Multi-Agent Simulation Suite (MASS)

NetLogo

NRCAM Virtual Cell

OptFlux

P System Modelling Framework

P-Lingua

PathwayOracle Toolkit

Platform Independent Petri net Editor (PIPE)

Programming Environment based on Petri Nets (PEP)

Push 3.0 Programming Language

PySCeS (the Python Simulator for Cellular Systems)

Repast Simphony

SABRE

SeSAm

SHARPE

SimPheny

Simulation in Python (SimPy)

SmartCell

Smoldyn

Snoopy

SQUAD

Stochastic Pi Machine (SPiM)

Stochastic Simulation Kit (StochKit)

StochSim

Swarm

SYCAMORE

Synthetic Biology Software Suite (SynBioSS)

Systems Biology Workbench (SBW)

TABASCO

Timed Net Evaluation Tool (TimeNET)

VANESA

Vensim

Visual Integration for Bayesian Evaluation (VIBE) 2.0

VisualBots for Excel

WebCell

xCellerator

Xholon