Pathway Analysis/Gene Regulatory Networks/Tools

Abstracts by Bio Application > Cross-Omics > Pathway Analysis/Gene Regulatory Networks/Tools

Each product name listed below links to a product abstract.

Agilent GeneSpring GX

AJAX viewer of interactive signaling networks (AVIS)

ARACNE

Bayesian Network Finder (BNFinder)

Beta Workbench (BetaWB)

Bio-PEPA

BioAmbient Machine (BAM)

BioBayes

BIOCHAM

BioDiVinE

Biolearn

Biologic Interactions and Network Analysis (BIANA)

BiologicalNetworks

BioMet Toolbox

BioNessie

Bionet

BioNetBuilder

BioNetGen

BioPathwise

BioTapestry

BisoGenet

ByoDyn

CADLIVE

Cell Illustrator

CellDesigner 4.0

CellML

CellML Tools

CellNetAnalyzer (CNA)

CellNetOptimizer (CNO)

Cerebral

ChemCell

Comparative Pathway Analyzer (CPA)

ComPath

COPASI

CycSim

Cytoscape

DataRail

Discrete Dynamics Lab (DDLab)

Dizzy

DomainGraph

Edinburgh Pathway Editor (EPE)

ENFRN_GRN

ExPlain Analysis System

Framework for Evaluation of Reaction Networks (FERN)

GenCLiP (Genes Cluster with Literature Profiles)

Gene eXpression Network Analysis (GXNA)

GEne Network Evolution SImulation Software (GeNESiS)

GEne Network GEnerator (GeNGe)

Genedata Phylosopher

GenePath

GenePro

Gene REgulatory Network Decoding Evaluations tooL (GRENDEL)

GeneNetWeaver (GNW)

Genes2Networks

Genetic Network Analyzer

GenMAPP

GenoCAD

Genomatix Pathway System (GePS)

Genowiz

GenYsisP toolbox

GINsim

GraphCrunch

GraphWeb

GridCell

In silico Biochemical Reaction Network Analysis (IBRENA)

Ingenuity Pathways Analysis (IPAŽ)

Integrated Genomics ERGO

Integrated Net Analyzer (INA)

IRIS Toolbox

Jarnac

JCell

KEGGanim

MADNet

MARIMBA

MATISSE

Medusa

Merlin

Metabolic Pathway Builder

MetaCore

METAMorph (Model for Experimentation and Teaching in Artificial Morphogenesis)

MetaReg

N-Browse

NetSim

Network Analysis Tools (NeAT)

Network Analysis, Visualization, & Graphing TORonto (NAViGaTOR)

NetworkAnalyzer

OptFlux

Panther Classification System

PathCase

PathExpress

PathVisio

Pathway Studio

Pathway Tools Cellular Overview

Pathway Tools Omics Viewer

PathwayAccess

PathwayLab

PathwayOracle Toolkit

Pathways Integration Tool (PINT)

PIMRider

Pointillist

PottersWheel

PPI Spider

Prion Disease Database (PDDB)

ProdoNet

ProMoT (Process Modeling Tool)

Protein Interaction Network Analysis (PINA)

Protein Lounge Bio-Research Tools

Qlucore Omics Explorer

R spider

RegAnalyst

RegulonDB

SABIO-RK

SABRE

SBML-SAT

SBPD extension package

SimBiology 2.1.2

SimBoolNet

SimPheny

Simulations and Networks Analyzer (Snazer)

Snoopy

SPIKE

SQUAD

SRI Pathway Logic

SRI Pathway Tools

StarNet 2

Studying Networks in the Omics World (SNOW)

Substructure Index-based Approximate Graph Alignment   (SAGA)

Synthetic Biology Software Suite (SynBioSS)

Synthetic Transcriptional Regulatory Networks (SynTReN)

Systems Biology Research Tool (SBRT)

Systems Biology Toolbox 2 for MATLAB

TERANODE Design Suite (TDS) Biological Modeler

ToppCluster

TranscriptomeBrowser and InteractomeBrowser

VANESA

VANTED

VisANT